Next: Results on the interaction
Up: Tests on Mandelate Racemase
Previous: Results on the core
  Contents
The results of the series of tests corresponding to the proton transfer and the carbon
configuration inversion steps, when a full minimization of the environment is carried out at
every TS search step in the core, are given in Tables 3.5 and 3.6,
respectively. Comparing with Tables 3.3 and 3.4,
it can be observed that the minimization of the environment at every TS search step in
the core clearly reduces the number of core iterations, although in turn tends to augment the
number of environment iterations. As a result, the difference between both strategies does not
seem to be very significant, although the minimization of the environment at every TS search step
rather tends to increase the total number of iterations in the two reaction steps studied here. As
expected, the energy column shows that the final transition state structure for each
core/environment partition is independent on the strategy used.
Table 3.5:
Results testing the core TS search / environment minimization switch for the proton transfer step.
At every TS search step a full minimization of the environment is performed.
core / env |
(iter.core/iter.env) |
energy |
3 / 1295 |
(96/1896) |
-7453.26 |
12 / 1286 |
(105/2075) |
-7453.25 |
23 / 1275 |
(42/1211) |
-7453.27 |
80 / 1218 |
(46/976) |
-7453.29 |
138 / 1160 |
(105/1088) |
-7453.27 |
194 / 1104 |
(62/752) |
-7453.27 |
399 / 899 |
(80/793) |
-7453.28 |
In kcal/mol |
|
|
|
Table 3.6:
Results testing the core TS search / environment minimization switch for the carbon configuration inversion step.
At every TS search step a full minimization of the environment is performed.
core / env |
(iter.core/iter.env) |
energy |
7 / 1291 |
(88/2092) |
-7443.25 |
17 / 1281 |
(143/1923) |
-7442.31 |
23 / 1275 |
(115/1908) |
-7442.31 |
34 / 1264 |
(66/1631) |
-7442.32 |
80 / 1218 |
(69/1861) |
-7442.33 |
138 / 1160 |
(52/758) |
-7440.50 |
194 / 1104 |
(73/920) |
-7440.50 |
643 / 655 |
(117/710) |
-7440.54 |
In kcal/mol |
|
|
|
Our experience shows that since the location of TS points is complicated,
the strategy of a full TS search before a next minimization is recommendable to unsure at a primary stage of the search
that the final convergence will be reached.
On the contrary, when the minimization is performed at every TS search step we have no
information about the desired success of the search until the end of the whole process.
Next: Results on the interaction
Up: Tests on Mandelate Racemase
Previous: Results on the core
  Contents
Xavier Prat Resina
2004-09-09